Barrnap: Bacterial ribosomal RNA predictor
...NA style. NHMMER binaries for 64-bit Linux and Mac OS X are included and will be auto-detected. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.2610 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...t is based on a series of programs that we developed: ABACAS, that is able to co...pair information. It is able to close gaps left open by the assembler in a draft...to the current assembly. An improved version, especially correction Pacfic Biosc...2610 days ago
CABOG: Celera Assembler with Best Overlap Graph
...onent of many genome sequencing projects. CABOG operates on small genomes such as...era Assembler software that was originally developed at Celera for the...ons of letters long from the hundreds of letters per read that modern sequencers...2607 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...CBI Prokaryotic Genome Annotation Pipeline is designed to annotate b...trol regions, direct and inverted repeats, insertion sequences, tran...er mobile elements. NCBI has developed an automatic prokaryotic gen...on of the new version of the pipeline in NCBI Handbook cha...2606 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...rvals from their observed adjacencies in modern species. We combine the results f...this method with data from chromosome painting experiments to produce a map of an...n the foreseeable future. Our methods were developed as part of a project to reco...2604 days ago
2604 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...e than 20 available assemblers it is hard to select the best tool. In this context we propose a tool that improves assemblies (and, as a by-product, perhaps even assemblers) by merg...2603 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single-...2603 days ago
2601 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...ft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cl...of genes from mobile elements (plasmids and genomic islands). Complete paper at https://www.ncbi.nlm...2599 days ago