Results for "TE"
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...ng reads (NGS-based mode) synteny to the genome of some relat...ce-based mode, pyScaf uses synteny to the genome of closely re...reference. In preliminary tests, pyScaf performed superbly...perfect...), which breaks synteny. pyScaf works very well if...2751 days ago
- If genomes were completely random sequences in a statistical sense, 'overl...es from Sanger reads. In contrast, real genomes often have long repetitive regions...d to handle the assembly of repetitive regions better. More at http://www.ho...
2750 days ago
- MCscan is a computer program that can simultaneously scan multiple gen...anchors. This is the toolset for generating the synteny correspondences in Plant Genome Duplication Database. It is intended as an easy-to-use and qui...
2748 days ago
Finding Patterns in Biological Sequences
...his report we provide an overview of known techniques for discovery of patterns of biological sequences (D...hods of biological verification of such patterns. Finally we list publicly...nt is available through http://genetics.uwaterloo.ca/∼tvinar/cs798g/mot...2748 days ago
- ...of unaligned nucleotide or protein sequences, and to perform a...-based analyses. The MEME Suite supports motif-based analysis...motif discovery, the MEME Suite provides tools for scanning s...the full power of the MEME Suite you will need to downloa...
2747 days ago
- Mauve is a system for constructing multiple genome alignments in th...st computational resources. It employs algorithmic techniques that scale well in th...pestis genomes can be aligned in under a minute, while a group of 9 divergent...
2028 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...oratory and the University of Tennessee. Key features of Prodi...st gene recognition tool (written in very vanilla C). It can a...isticated ribosomal binding site scoring system that enables i...se. Download the latest version of Prodigal at ...2741 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/
2722 days ago
- ...ory is needed for smaller genomes. Parasol or SGE for cluster support. 750M disk space Instructions IMPORTANT NOTE: Progressive Cactus does not...tus.git cd progressiveCactus git pull git submodule update --init make It is also co...
2722 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously risin...of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arisin...onships between genomic regions are indicated by arcs. Both methods allow...2721 days ago
