GMOL: An Interactive Tool for 3D Genome Structure Visualization
GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve corresponding genome sequences.2298 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to j...inders from an adequate scaffolding evaluation are genome repeats. The previous standard for evaluation (Hunt et al., Genome Bi...2298 days ago
2276 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome al...2276 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and envi...- Uppsala2018 February - Uppsala Introduction to Genome Annotation 2015 April - Upps...ala2017 April - Uppsala2018 May - Uppsala De Novo Genome As...2271 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism...eads_1.fa --read2 reads_2.fa --contig contigs.fa --genome ge...2271 days ago
2269 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generatio...(both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on an extension of BW...index that represents a population of human genomes,...2250 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction fo...iction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic...all evidence for genes, from expressed sequences, genome as...2250 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemblies into a combined consensus asse...the best segments of the individual assemblies. Genome assembly projects typically r...er algorithm that merges multiple assemblies of a genome in...2250 days ago