ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose collection of scripts. To run the correctionroutine see the section below. Descriptions of the other scripts...2373 days ago
LRCstats: Long Read Correction Statistics
...d generation sequencing technology such as machines produced by Pacific Biosciences. The reads produced by...than reads produced by next generation sequencing technologies, such as those produced by Illumina. Howeve...2373 days ago
2371 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...nterpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared t...2370 days ago
mojolicious: a next generation web framework for the Perl programming language.
...s simple enough to get started without knowing much about the language and powerful enough to keep you going, learning by doing was much fun. While most of the techniques used are o...2366 days ago
Dot, an interactive viewer for genome-genome comparison
...order to evaluate new assemblies and perform exploratory comparative genomics. Dot supports the output of MUMmer’s nucmer aligner the most commonly used software metho...2364 days ago
2359 days ago
HTTDB - Horizontally transferred transposable elements database
...ibute to the survival of the host that it inhabits, they are k...pite their capacity for transposition inside genomes, they can...t was transferred from Drosophila willistoni to ...atabase to keep an updated repository of HTT events in all euk...2355 days ago
RGFA: powerful and convenient handling of assembly graphs
RGFA, an implementation of the proposed GFA specification in Ruby. It allows the user to conveniently pars...illustrate a use case, in which the assembly of a repetitive metagenomic fosmid insert was completed using...1628 days ago
2352 days ago