Results for "Ra"
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...e bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks...sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line...2684 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...e estimation. Results for simulated and real datasets are discussed and provide evidence that ConPADE performs well as long as enough sequencing coverage is available, or the true c...2684 days ago
- ...udes content suitable for both beginners and experts. Below are links to training modules (webinars and Po...r data processing, as well as information for specialized applications. Training Resources: Bioinforma...
2684 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. The program has unique features that are...sing of downloaded files (archive extraction, file conversion, etc.)...wnloaded files, including archive extraction and file conversions. h...
2682 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2681 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are co...reads in fasta format) to high-confidence draft assembles. PBJelly fills or...ured gaps as possible to produce upgraded draft genomes. ----- PBHoney...2681 days ago
splitbam: splits a BAM by chromosomes
...also be added to those empty BAMs to avoid some tools (like samtools) to crash. Usage java -jar splitbam...RED. -u (unmapped chromosome name): default:Unmapped -e | --empty : generate EMPTY bams for chromosome h...2680 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a referen...ty for 454 and Illumina sequence reads. YASRA uses LASTZ (http://bx.psu.edu...ble/binary search path before installing YASRA.2679 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text r...ining additional information about particular regions. The program is written in Java in order...2679 days ago
- ...out the help of a reference genome. DIAL works even when the depth of coverage is insufficient for de novo...as the identified sequence differences can be used to design genotyping arrays to assist in the species' m...
2679 days ago
