Results for "NT"
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...twork structural properties. Edges are drawn as curved links. Simple and interpretable. The purpose of th...sh; a method that is both general and tunable and useful as a starting point in visually exploring network...2696 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design prim...ose gaps on shotgun assembled contigs based on a reference seque...dentify syntenies of assembly contigs against the reference. The...ers could also run tblastx on contigs that are not used to gener...
2696 days ago
- ...projects/brig If you have any questions or comments, post them on one of th...Features: Images show similarity between a central reference sequence and oth...read-mapping files enabling genomic regions present in unassembled sequence data...
2696 days ago
- ...oluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.I...aring the genome to itself.It is a stand-alone graphical user interface (GUI) program which run...
2696 days ago
- ...quences can be analyzed by using a suite of multiple and pair-wise alignment algorithms. The results of these comparative analyses are also displayed in the 3D environment of Sockeye. By using the Java...
2696 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can pl..., and providing information for specific data points using mouse hover display an...s (Windows, MacOS, Linux). Users can input data into J-Circos using flat data for...
2696 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete g...coordinates. Using a scoring function which accounts for the distance between nei...ologous genes found within a single genome, segmental genome duplications can be...2695 days ago
- Cgaln (Coarse grained alignment) is a program designed to align a p...nces of not only bacteria but also entire chromosomes of vertebrates...computer. Cgaln performs an alignment job in two steps, at the bloc...atter is devoted to detailed alignment within the limited regions fo...
2691 days ago
- ...eory on the genome. For example, bedtools allows one tointersect, merge, count, complement, and sh...tory at the University of Utah and benefits from fantastic contributions made by sc...
2689 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation...t estimates the ploidy of any given contig/scaffold based on its allel...applicability of the method for variant calling and allele dosage est...coverage is available, or the true contig ploidy is low. https...2689 days ago
