2841 days ago
2837 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage i...m/examples.php?id=59 http://www.cs.rpi.edu/~magdon/ps/conference/s...g/AssemblyClass/01.%20Assembly%20Intro.pdf http://lsl.sinica.edu.t...2840 days ago
2838 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the d...the optimal assembly for diverse species. Optimizing various...yield an assembly of high accuracy. In this study, we employ...enerated by the state-of-the-art assemblers and the hybrid as...2836 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants and chromosomal abnormalities. Unfortunately, the ma...hallenging and time consuming process for most NGS alignment p...d alignment complexity. We describe an algorithm that is up to...2837 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality...can be obtained with ease. It performed better than de novo assemblers and c...2836 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instr...tions on how to use E-MEM. E-MEM source code The source code can b...t computation of Maximal Exact Matches for very large genomes, Bioi...2836 days ago
2835 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibl...anger sequencing. Despite this, some old problems have become even more d...sign tools able to assemble, de novo, an organism sequenced with short re...2832 days ago