Results for "TE"
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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...f new features and analytical methods allowing extensive DNA polymorphism analyse...atasets. Among other features, the newly implemented methods allow for: (i) analy...data; (iv) visualizing sliding window results integrated with available genome a...2702 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTURE for popula...inference. A GUI is available for interpretation. Download from the...n the GUI is unavailable. GLOBETROTTER, the admixture dating method...2695 days ago
- ...ge: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options -...(described below) --annotate, -a Add character annotati...
2695 days ago
- ...Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas...stored in the form of Mutation Annotation Format. This package attempts to summarize, analyze, an...
2692 days ago
- ...drawing networks. Nodes are mapped to and positioned on radially distributed linear axes — this map...work structural properties. Edges are drawn as curved links. Simple and interpretable. The purpose of the...
2692 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close g...o find alignment positions and identify syntenies of assembly contigs again...Promer are used followed by the 'delta-filter' utility function. Users cou...
2692 days ago
- ...ene presence, absence, truncation or sequence variation in a set of complete genomes, draft genomes or even raw, unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling...
2692 days ago
- ...rison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertion...e genomic sequences, especially closely related genomes such as inter-specie...ram which runs on Linux, Unix, Mac OS X (tested on version 10.2.4 only) and...
2691 days ago
- ...nd annotation data. Individual annotation objects are displayed in Sockeye by using custom 3D models. Ensembl-derived and imported sequences can be analyzed by using a suite of multiple and pair-wise ali...
2691 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos...lay and zoom in/out functions. J-Circos uses the Java computer language to enable it to be used on most operating systems (Windows, MacOS, Linux). Us...
2691 days ago
