Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the impl...(embl format) can be automatically loaded into the freely available Artemis genome viewer...2373 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interv...2370 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotati...2370 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate ne...ommonly used software method for aligning genome assemblies. A quick script ca...n demand. Dot, an interactive viewer for genome-genome...2366 days ago
2361 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Se...nservative levels, and genetic variation from pan-genome sight. At the same time, anal...l result data from many other programs, including genome alignm...2357 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of...ir capacity for transposition inside genomes, they can frequently transpo...d by the unprecedented amount of new genomes available. Despite the recog...viral genomic fragment into the host genome. http...2357 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the...2351 days ago
karyoploteR: plot whole genomes with arbitrary data
karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R...ploteR is to offer the user an easy way to plot data along the genome to get...2014 days ago
2347 days ago