ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modif...2601 days ago
2588 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...o create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA fil...n and amplicon datasets from current sequencing technologies such as S...o be used to help decide between alternative sequencing methods for a sequence...2566 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...ion across different error profiles, rates and sequencing technologies even with... Transcriptome mapping through internal construction of a transcript...nt of a new spliced-alignment mode for mapping RNA-seq reads is under way.Descriptio...2552 days ago
2534 days ago
GeneProf: analysis of high-throughput sequencing experiment
...lyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generatio...ntegrated Analysis:Analysis of ChIP-seq and RNA-seq data in one place, p...) and data from GeneProf may be used externally (cp. Section 'Web API...2524 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2379 days ago
2377 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2362 days ago
2350 days ago