Hawkeye: an interactive visual analytics tool for genome assemblies
Genome sequencing remains an inexact science, and genome sequences can contain significant error...ome assemblies, designed to aid in identifying and correcting assembly errors. U...e all levels of an assembly along with summary statistics and assembl...1988 days ago
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UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualiz...t intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout en...mber of elements in the aggregates and intersections, as well as additional summary statistics...1961 days ago
FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an input, and provides extensive functional...ied by SNP2GENE or as provided manually) and annotat...1837 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio)...an be simulated using summary statistics, phylogenies, Variant Call Format (VCF) files, and coalescent simulations—...1783 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted from...Details about extracted exons and introns are reported (Locus,...ata (nucleotide scan check)). Statistics are also reported (ove...uding not AGCT bases (29+30), and redunda...1460 days ago
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