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UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine which set of b...3048 days ago
- ...es and related adaptors to access binary file formats including Bam, BigWig, BigBed, and USeq. The Bio::ToolBox package includes scripts for setting up databases of annotation, coll...
3047 days ago
- ...GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the oth...database (no relational database required!) Later we will show how to set up a genome size database using...
3047 days ago
- GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Global Alliance...
3016 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...al test for minimizing false-positive results. Together with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on a standard de...2999 days ago
- ...bsp;Locally ConsistentEncoding) is a tool for compressing FASTQ files. It is designed specifically for the Illumina-generated FASTQ files, but supports any valid FASTQ with con...
2991 days ago
- Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequence GC co...
2991 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...y of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such as HOMER. Setting up your computing environment R...2980 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold, including indels up to 4+4 bp. This manual, descr...2980 days ago
YASS :: genomic similarity search tool
...y repeats reporting of various alignment statistical parameters (mutation bias along triplets, transition/transversion) post-processing step to group gapped alignments...2974 days ago
