2403 days ago
2392 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...letions. It attempts to combine the best of local and global alignments algorithms in searching for evolutionarily related regions of sequences in order to achieve the best alignment...2396 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...tween pairs of DNA sequences. The detection is based on relative compression, namely using a FCM, also known as Markov model, of high context order (typically 20). The method ha...2381 days ago
MeDuSa: a multi-draft based scaffolder
...r genome scaffolding. MeDuSa exploits information obtained from a set of (draft or closed) genomes from related organisms to determine the correct order and orientation of the contig...2326 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...th the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM appr...h exploits compositional biases using variable order motif distributions and captu...e predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in...2364 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomi...2357 days ago
HTTDB - Horizontally transferred transposable elements database
...bias and lack of studies in many taxa. To date, there has been no easy way to visualise each TE or host species, and should be further analysed in order to provide a more comprehensi...2348 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
...s designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order.2306 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes of related organisms as references to more accurately order and orient the contigs of a d...2306 days ago