2368 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2364 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...arent and portable model of job control and monitoring where different assembly stages can be executed and re-executed separately or in unison on a wide variety of architectures. ht...2357 days ago
GPOPSIM: a simulation tool for whole-genome genetic data
...and genomic data, with a variety of population and genome structures and trait genetic architectures. It provides flexible parameter settings for a wide discipline of users, especial...2330 days ago
2328 days ago
karyoploteR: plot whole genomes with arbitrary data
...hics packages. The aim of karyoploteR is to offer the user an easy way to plot data along the genome to get broad genome-wide view to facilitate the identification of genome wide relations and distributions.1981 days ago
EWAS: epigenome-wide association study software 2.0
...EWAS2.0 software was developed based on our “population epigenetic framework” and can perform: (1) epigenome-wide single marker association study; (2) epigenome-wide methylation haplotype (meplot...2267 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...tructural variations. The k-mer search helps to detect and split reads that cannot be aligned linearly, enabling ngmlr to reliably align reads to a wide range of different structural...2232 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...utes aligning one million single-end reads onto the human reference genome. Another remarkable improvement of SOAPaligner is that it now supports a wide range of the read length....2204 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. Mimic...culars of model organism frequently used in E&R studies and offers a wide range of different adaptive m...2076 days ago