Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...A, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic...cing technologies such as Sanger, 454, Illumina. These simulated datasets can be used to test the accuracy...2598 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of l...s up to megabases long. We present numerous applications of the method, ranging f...2598 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct synteny...2598 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and&nbs...urces on the web include CAZy database and CAT....d based on the family classification from CAZy database&n...omain for each and every CAZyme family along with its loc...ain regions in each and every CAZyme family and subfamily....2593 days ago
Genome Annotation Transfer Utility (GATU)
...of SARS coronavirus is sequenced, it is possible, using GATU, to automatically annotate the new strain us...nome and absent from the reference genome are also identified; these ORFs can be further analyzed using BL...2593 days ago
2588 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...ap is also used as an overlapper in a new de novo genome assembly project called Ra (https://github.com/ma...he current effort as well as how to reach the experimental implementation can be found here: doc/rnaseq.md...2584 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...relationships between data sets. It aims to be scalable and flexible, facilitati...t and accurate analysis and management of large-scale genomic data. The overview...eference table offers documentation for all applications and scripts.2579 days ago
Genetic-mapper: SVG Genetic Map Drawer
...is a perl script able to draw publication-ready vectorial genetic m...s. Perl script for creating a publication-ready vectorial genetic/l...cs (SVG) format. The resulting file can either be submitted for publ...lly a logarithm of odds (LOD score) can be provided. Any extra param...2573 days ago
2572 days ago