2278 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome a...2278 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and envi...- Uppsala2018 February - Uppsala Introduction to Genome Annotation 2015 April - Upps...ala2017 April - Uppsala2018 May - Uppsala De Novo Genome A...2273 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism...eads_1.fa --read2 reads_2.fa --contig contigs.fa --genome g...2273 days ago
2271 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBi...fication and analysis step to improve the structural accuracy of the resulting sequence. The package also includes a...2256 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generatio...(both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on an extension of BW...index that represents a population of human genomes,...2252 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Ge...and more recent gene assembly (de-novo and genome-assisted) methods. The basic...ing all evidence for genes, from expressed sequences, genome assembly sequences, related species protein seq...2252 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemblies into a combine...segments of the individual assemblies. Genome assembly projects typically r...thm that merges multiple assemblies of a genome into a single superior sequence.2252 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome f...2252 days ago