Results for "Ra"
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DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replaceme...sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000. More at&...2624 days ago
Enrichr: a comprehensive gene set enrichment analysis
...is a popular method for analyzing gene sets generated by genome-wide experiments...ntains a large collection of diverse gene set libraries available for analysis an...180 184 annotated gene sets from 102 gene set libraries. New features have been a...2624 days ago
- ...ce sequence is in most cases the full genome sequence but sometimes, a library of EST sequences is used.In...a. Mappers differ in which options they can take in, how fast and how accurate they are. Bowtie is faster...
2619 days ago
- ...leotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a single ASCII character for brevity. It was orig...
2618 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e...003) showed that the frequency of tetra-nucleotides in bacterial geno...phylogenetic signals. Even though tetra-nucleotide analysis (TNA) uti...n be useful for phylogenetic characterization when whole genome...
2617 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffoldi...
2616 days ago
CLA: Contig-Layout-Authenticator
...hortcomings associated with the construction of draft genomes with Illumina paire...o cross-check before constructing the consensus draft. The CLA pipeline was desig...gs. The tool has been validated and compared favorably with other widely-used sca...2616 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of bacterial seque...
2616 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a s...t a closely related reference. IMAGE, an iterative approach for closing gaps...close gaps left open by the assembler in a draft genome, even when using the...2608 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for...OG is an extension of the Celera Assembler software that was o...G is one of many software programs called genome assemblers. T...ypes of one human genome (J. Craig Venter, 2007). It was the f...2606 days ago
