Scallop: reference-based transcriptome assembler for RNA-seq
...rough a novel algorithm that can be proved preserving all phasing paths from read...hieves both transcripts parsimony and coverage deviation minimization. Scallop p...p (thanks Roman Cheplyaka for the interview). It is available at both&n...2251 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction f...seehttp://arthropods.eugenes.org/EvidentialGene/Construction refer...ome-assisted) methods. The basic Evigene methods involve using ava...tructions are classified by gene evidence for best qualities per "...2251 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies. Genome assembly projects typ...2251 days ago
2246 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating librar...caff is complementary to Lachesis, providing midrange contiguity to su...ies without the need for laborious in vivo cloning steps. Further inf...2245 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
This software is provided ``as is” without warranty of any kind. In no event shall the author be held responsible for any damage resulting from the use of this software....2245 days ago
2244 days ago
LAMSA: fast split read alignment with long approximate matches
...mming (SDP)-based split alignment approach to handle the large or non-co-linear variants. We benchmarked LAMSA with simulated and real datasets having various read lengths and se...2244 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously described haplotype asse...2243 days ago
2243 days ago