MGRA: Breakpoint graphs and ancestral genome reconstructions
...ral genomes at the internal nodes of the phylogenetic tree. The phylogenetic tree may be also specified completely or partially, in the latter case MGRA can reconstruct conserved ancest...2536 days ago
Web Apollo: a web-based genomic annotation editing platform
...ncing new genomes. These researchers require tools to describe the functional features of their newly sequenced genomes. With Web Apollo researchers can use any of the common browse...2533 days ago
2530 days ago
LIBSVM -- A Library for Support Vector Machines
...software for support vector classification, (C-SVC, nu-SVC), re...M). It supports multi-class classification. Since version 2.8, it i...ng Research 6, 1889-1918, 2005. You can also find a pseudo code ther...ions Efficient multi-class classification Cross validation for mod...2528 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics....2524 days ago
2523 days ago
2523 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...lf the assembled sequence is in contigs longer than 101 kilobases and in scaffolds longer than 269 kilobas...s separated by ∼280 bp or ∼3.2 kbp, and many gaps between contigs can be closed using paired-end p...2431 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome b...rs make handling the data more complicated because they result in a l...veloped an error correction software called QuorUM. QuorUM is mainly...package and as a module of the MaSuRCA assembly software. Both are a...2430 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only...2428 days ago