Results for "R"
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The hive plot is a rational visualization method for drawing networks. Nodes are mapped to and positioned on radially distributed linear axes &m...ork structural properties. Edges are drawn as curved links. Simpl...al and tunable and useful as a starting point in visually explori...2692 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assemble...on a reference sequence. It uses MUMmer to find alignment positions a...g contigs and gaps in to account. MUMmer's alignment generating progra...
2692 days ago
- ...pplication that can display circular comparisons between a large number of genomes, with a focus on h...le at:http://sourceforge.net/projects/brig If you have any q...ilarity between a central reference sequence and other sequen...unassembled sequence data. BRIG also accepts SAM-formatted...
2692 days ago
- ...the genome wide sequence comparison results derived from volu...l output, so as to locate the rearrangements, insertions or d...sequences, especially closely related genomes such as inter-s...n version 10.2.4 only) and Microsoft Windows platforms and is...
2691 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species...data. Individual annotation objects are displayed in Sockeye by usin...algorithms. The results of these comparative analyses are also displa...
2691 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information f...uage to enable it to be used on most operating systems (Windows, MacOS,...
2691 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic...sequences. As input, DAGchainer accepts a list of gene pairs...uence homology along with their genome coordinates. Using a s...etween homologs, maximally scoring chains of ordered gene pai...on includes both the DAGchainer utility and a Java-based grap...2691 days ago
- Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genomic sequences of n...only bacteria but also entire chromosomes of vertebrates on a n...at the nucleotide level. The former "coarse-grained" alignment...the sense that rearrangements are taken into consideration whi...
2686 days ago
- ...the bedtools utilities are a swiss-army knife of tools for a wide-r...ely-used tools enable genome arithmetic: that is, set theory...and shuffle genomic intervals from multiple files in wi...by combining multiple bedtools operations on the UNIX command lin...
2684 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...oidy and Allele Dosage Estimation), a probabilistic method that estima...n contig/scaffold based on its allele proportions. In the process, they report findings regarding errors in sequencing. The method...sults for simulated and real datasets are discussed and provide eviden...2684 days ago
