Results for "R"
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This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtaine...ltz, Adam Skarshewski, Gene W. Tyson, Kåre L. Nielsen and Per .H....2668 days ago
- Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories: SamtoolsReading/writing/editing/indexin...Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short...
2667 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio...Analysis suite. All packages are believed to be open source o...tes for up-to-date license information. A separate page lists&...difications and methylation Barcoding Genome Browsers Run Q...2667 days ago
- Nice biostat turorial by Ingo Ruczinski
2666 days ago
- Krona allows hierarchical data to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes su...-contained and can be viewed with any modern web browser (see Browser sup...
2660 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC v...notate the plots with taxonomic information. Different sets of anno...plot. Bins can be manually defined from plots, or be imported from...2655 days ago
- SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleoti...data. SNP reports (acceptable in a variety of formats) much each cor...the main script, snpgenie.pl, in a directory containing the necessar...
2651 days ago
- ...website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process transcriptomic h...nsive bioinformatics skills. It covers all steps from tissue collec...u/sequencing.html http://sfg.stanford.edu/BLAST.html http://sfg.s...
2649 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequ...supported version, please see the TMAP version associated with a Torrent...2648 days ago
- JSON (JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read and write. It...on a subset of the JavaScript Programming Language, ...s. In most languages, this is realized as an array, vect...
2647 days ago
