Results for "R"
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High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in bio...er, the analyses of non-model organisms, for which little prev...ourse addresses the specific strengths and weaknesses of alter...HTS approaches specifically targeting non-model organisms....2646 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd ge...ning that it uses two sets of reads: the reference read set,...s Illumina reads. Usually, errors in PacBio reads include m...rge read data sets, included from eukaryotic or vertebrate sp...2641 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a sta...-rwxrwxr-x 1 urbe urbe 1,3M Apr 10 11:41 dumpSingletons-rwxrw...urbe 526K Apr 10 11:41 tigStore-rwxrwxr-x 1 urbe urbe ...2641 days ago
- Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The...tools like Google Maps© or Open Street Maps: exploring i...169 species including 10,545 Archaea, 418,777 Bacteria and 70...Possibility to download the corresponding subtree in newick e...
2641 days ago
- UpSetR generates static UpSet plots. The...pSet technique visualizes set intersections in a matrix layout and introduces aggregates based on gro...associated data, such as the number of elements in the aggregates...input styles. "File" takes a correctly formatted.csv file. "L...
2637 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the fo...ations -adjacencies- between pairs of ancestral genes or gene d...speciation, duplication, loss, transfer, which are either given...eCoLT, ArtDeCo and DeClone. It provides statistical supports on...2637 days ago
Metagenomics assembly workshop !!
...elcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the...metagenome assembly and binning. The Tutorial Data Set FastQC Quality C...ly IDBA-UD Assembly Ray Assembly Gene Prediction Assembly Evaluation...2633 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data...ications to discover de novo the major re-occuring combinatorial and...ematically annotate a genome in one or more cell types. By automatic...2632 days ago
- DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies Our work is published in Scientif...DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneou...ps://github.com/yechengxi/DBG2OLC/raw/master/Manual.docx To use...
2632 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for pr...quences including contigs and assemblies, providing a speedup of BLAST ran...
2624 days ago
