2400 days ago
2399 days ago
TeachEnG: Teaching Engine for Genomics
TeachEnG (pronounced “teaching”), a Teaching Engine for Genomics, provides educational games to help students and researchers understand key bioinformatics concepts. The...2398 days ago
Biological file format tutorial
This section explains some of the commonly used file formats in bioinformatics. The information provided here is basic and designed to help users to distinguish the d...2394 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for ad...re available at the Genome Sciences Centre website: http://www.bcgsc.ca/platform/bioinfo/software/nan...2393 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...te visually annotating and exploring the 3D physical architecture of genomes.&nbs...contact matrix as input and predicts the topologically associating domains and ch...enhances the integration of genome topology/physical structure with extensive gen...2391 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
...ot well suited for NGS projects. To address this limitation, we developed the first de Bruijn graph assembler, dipSPAdes, for HP genomes that significantly improves on the state-of-...2390 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy...table model of job control and monitoring where different assembly stages can be executed and re-executed...2390 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...tion is based on relative compression, namely using a FCM, also known as Markov model, of high context order (typically 20). The method has been approached with a tool (also called SMASH). For visualization...2390 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
...regulatory relationships of 800 human TFs and 828 mouse TFs, respectively. They have been derived from 11,237 pubmed articles, which describe small-scale experimental studies of tra...2390 days ago