LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector class...using second order information for training SVM. Journal of Machine...an easily link it with their own programs. Main features of LIBS...some data mining environments: RapidMiner, PCP, and L...2529 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics....2525 days ago
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orthodotter: Synteny plots (oxford grid)
...rg> : give the x and y sets and the color separated by double-dots,...red points. Could give several -toPlot arguments....is, default is 600 -r <int> : radius of circle representing or...2522 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of de...folds longer than 269 kilobases. Incorporating fosmid ends recovers entire chromosomes. Meraculous relies on an efficient...be closed using paired-end placements. Practical issues with the dataset...2432 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150 bp) reads at a low cost. Even with low (advertised 1%) error rate, 100 × coverage Illum...2431 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
...where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the bes...2429 days ago
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DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...ngine for DFAST, which is also available as a standalone command-line program. The new engine can annotate...ial genome within 10 minutes, with rich information such as pseudogenes, translation exceptions, and ortho...2425 days ago