Results for "Assembled DNA"
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Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 C...2811 days ago
- Development of cancer is driven by somatic alterations, including numerical and structur...somal CNA-associated breaks by a genome-wide approach, which can be applied to DNA copy number data obtained by...
2191 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundreds or even...ch uses interpolated Markov models (IMMs) to taxonomically classify DNA sequences, can accurately cla...
2801 days ago
- Visualization has played an extremely important role in the current genomic revolution to inspect and understand varia...eference coordinates. Instead, structural variations captured by long reads or ass...
2790 days ago
- ...signed for targeted sequence capture, in which DNA sequencing libraries are enriched f...extract target sequences from high-throughput DNA sequencing reads. Targeted b...ibuted to separate directories, where they are assembled separately using SPAdes...
2776 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal...ry memory efficient, which is achieved by using a compressed representation of DNA sequence reads. More at htt...
2742 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifa...rt tools for each step as well as new complementary tools tailored for ancient DNA data within a single integrat...
2740 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerg...wrapper/tool that can accept any number of sequence (FASTA) files containing ass...2731 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indica...Use sequence quality data properly. Compare DNA to proteins, with frameshifts...
2731 days ago
- pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pa...ks synteny. pyScaf works very well if divergence between reference genome and ass...
2731 days ago
