FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is...experiments with complete and draft genomes, its accuracy is on par with BLAST-bas...2167 days ago
2135 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2133 days ago
CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for comparative microbial genomics. The package is a cus...16S rRNA phylogeny, basic DNA and codon statistics, proteome comparisons using BLAST and...2127 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleoti...ly compared. The tool includes functionality to extract, analyze, and automate BLAST que...2090 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleoti...ly compared. The tool includes functionality to extract, analyze, and automate BLAST que...2086 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate modu...ng IDs or sequences, and generates annotations for each gene based on multiple databases about pathways, diseases, and...2069 days ago
2064 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hit...2058 days ago
RepeatMasker compatible blast tool
RMBlast is a RepeatMasker compatible version of the standard NCBI blastn program. The primary difference...the addition of a new program "rmblastn" for use with RepeatMasker a...ssary features to the stock NCBI blastn program. These include: S...https://anaconda.org/bioconda/rmblast...2020 days ago