E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source code c...2725 days ago
2721 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and arch...learns all the properties it needs to on its own. Open Source: Prodigal source code i...2712 days ago
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Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each elemen...ow is similar to MCE::Loop, but allows for multiple code blocks to run in parallel wit.... Like with MCE::Flow, MCE::Stream can run multiple code b...2678 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short a...rsion associated with a Torrent Suite release below. Get the latest source code:...2617 days ago
2676 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code f...2651 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no sam record was found for a chro...2650 days ago