Results for "PacBio read correction"
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Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called with a command subcommand syntax:&nb...2817 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacter...enetic classification of raw sequence reads into groups representing the...more difficult, by producing shorter read lengths than previous technol...NA sequences, can accurately classify reads as s...
2817 days ago
- Visualization has played an extremely important role in the curr...r, most of the information in read-to-reference or genome-genome...l variations captured by long reads or assembled contigs often n...atterns in alignments of many reads across multiple chromosomes,...th long, short, or paired-end reads, Rib...
2806 days ago
- IMPUTE2 is a computer program for phasing observed genotypes and imputing missing...load package. Once you have done this, you will be ready to try some example analyses...m can perform a function that isn't listed, you can read our&n...
2799 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process...equencing data. ART can also simulate reads using user own read error mo...n sequencing data analysis, including read align...
2793 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It...quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio rea...
2792 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq...the same directory. Simulate diploid reference and read seque...2774 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop com...ase) For the impatient A typical Minia command line looks like: ./minia -in reads.fa -...
2758 days ago
- fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are sup...pair of files as input. If no input file is specified, fqtools will attempt to read data...
2757 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) ma...ndom duplications with the direction of discordant read pairs. PRISM_CTX is a tool fo...itional information is available in the PRISM README&nbs...
2755 days ago
