3040 days ago
Pattern Searching in a Single Genome
...) can be more than a matter of satisfying curiosity , but also give answers to many issuess uchas medical conditions . However,there are a number of ways of searching with in a sing...3033 days ago
RNA-Seq De novo Assembly Using Trinity
...sents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysali...3017 days ago
3003 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...can merge millions of paired end reads within a couple of minutes on a standard desktop computer. More at http://www.exelixis-lab.org/web/software/pear Paper: http://ww...3003 days ago
REAPR: a universal tool for genome assembly evaluation
...in an assembly for manual inspection. It reports mis-assemblies and other warnings, and produces a new broken assembly based on the error calls. The software requires as input an assemb...3003 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpa...2994 days ago
2991 days ago
2990 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools suc...2983 days ago