Web Apollo: a web-based genomic annotation editing platform
...of the natural consequences following from current advances in sequencing technology is that there are mor...ome in real time, whether they are in the same room or working from opposite sides of the world.2534 days ago
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LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classif...find a pseudo code there. (how to cite LIBSVM) Our goal is to help...nbsp;LIBSVM provides a simple interface where users can easily l...l, LabVIEW, and PHP interfaces. C# .NET code...2529 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
...nown as functional genomics. The book provides the reader with an understanding of the principles and approaches of functional genomics and of the potential and limitations of compu...2525 days ago
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orthodotter: Synteny plots (oxford grid)
orthodotter -h -------------------------...--------------------- orthodotter - Plot orthologous genes on...and y sets and the color separated by double-dots,...To launch the clustering of dots, use extra-option...Size, default is 1 -filter : check chromosome nam...2522 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...bsp;k-mer (deBruijn) graph of oligonucleotides with unique high quality extensions in the dataset, avoiding an explicit error correction step as used in other short-read...2432 days ago
QuorUM: An Error Corrector for Illumina Reads
...h low (advertised 1%) error rate, 100 × coverage Illumin...andling the data more complicated because they result in a lar...mbly) easier. Here we use the term “error correction&rdq...available. QuorUM is distributed as an independent software p...2431 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-o...2429 days ago