2399 days ago
Mash: fast genome and metagenome distance estimation using MinHash
...ed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for developmen...2399 days ago
TeachEnG: Teaching Engine for Genomics
...e for Genomics, provides educational games to help students and researchers understand key bioinformatics concepts. The current version includes interactive modules for sequence ali...2398 days ago
SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2397 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...t of nanopore sequencing technology. The first step of NanoSim is read characterization, which provides a comprehensive alignment-based analysis and generates a set of read profiles ser...2394 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facili...ns and chromatin loops in the genome. It then generates a physical 3D model which...re of the genome. Deltafeatures a highly interactive visualization tool which...2392 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
...there is a shortage of tools for assembling HP genomes from the next generation sequencing (NGS) data. Th...initial approaches to assembling HP genomes were proposed in the pre-NGS era and are not well suited for N...2391 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
Meraculous is a whole genome assembler for Next Generation Sequencing data geared for l...that capitalizes on the high accuracy of Illumina sequence by esc...ant with the assembly process. Meraculous achieves high performan...ss pipeline implements a highly transparent and portable model of...2391 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...alignment-free method to find and visualise rearrangements between pairs of DNA...ization, SMASH outputs a SVG image, with an ideogram output architecture, where t...(only value varies). The following image, illustrating the information maps betw...2391 days ago
Foldit: Solve Puzzles for Science
...tein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Science, in collaboration with the UW Department of...2390 days ago