Musket: a multistage k-mer spectrum based corrector
...pectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and...threaded using a master-slave model and demonstrates superior parallel scalabilit...2407 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences....equences that share only some moderately conserved regions and/or ha...long insertions or deletions. It attempts to combine the best of lo...he small changes of alignment parameters, particularly the gap exten...2406 days ago
2406 days ago
kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics2405 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools f...genomes, including variant calls, recombination detection, and phylogenetic trees....Core-genome alignment and analysis Gingr - Interactive visualization of align...2404 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...d bound approach which starts branch expansion in a greedy way taking the symbols from the given pair of sequences (protein or nucleotide) and results in an optimal alignment faster than conventional dymanic pr...2404 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
...rol (eSC) can be used to simulate multi-chromosome genome evolu...bsp;eSC also automatically creates statistical summaries of the simulation as it runs including text and image files. Also inclu...leaf and branch nodes from a completed simulation and with the help...2404 days ago
2404 days ago
Mugsy: multiple whole genome alignment tool
...llinear regions, and the segment-based progressive multiple alignment strategy from Seqan::TCoffee. Mugsy...form of multi-FASTA files and does not require a reference genome. To cite Mugsy, use: Angiuoli SV and...2404 days ago
MOSS: A System for Detecting Software Similarity
...ure Of Software Similarity) is an automatic system for determining the similarity of prog...te, the main application of Moss has been in detecting plagiarism in programmin...significant improvement over other cheating detection algorithms (at least, ov...2403 days ago