BOL: Harvest: a suite of core-genome alignment and visualization tools

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Harvest: a suite of core-genome alignment and visualization tools

Harvest: a suite of core-genome alignment and visualization tools

By Jit 2571 days ago

Harvest
alignment
visualization
intraspecific
microbial
genomes
recombination
detection
phylogenetic
trees

https://harvest.readthedocs.io/en/latest/

Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees.

Tools

Parsnp - Core-genome alignment and analysis
Gingr - Interactive visualization of alignments, trees and variants
HarvestTools - Archiving and postprocessing

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Harvest: a suite of core-genome alignment and visualization tools