Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply i...he assembly of a dataset of paired 75-bp Illumina reads derive...han 95% of the genome is recovered, with no errors; half the a...of the k-mer (deBruijn) graph of oligonucleotides with u...2432 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150 bp...more complicated because they result in a large number of low...o denote the reduction in errors due to both changes in indiv...ge and as a module of the MaSuRCA assembly software. Both are...2431 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (P...t possible assemblies, give it both Illumina reads and long reads,...2429 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and...nbsp;bad and QC folders, which contains good reads,....and other Illumina 1.8 or newer formats2426 days ago
2425 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public...e its first launch in 2016. Here, we present a newly implemen...rmation such as pseudogenes, translation exceptions, and orth...er the GPLv3 license with external binaries bundled in the so...2425 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, a...yed in its genomic context in parallel to the genomic context o...tant species displayed in this browser are from Ensembl.2421 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (...etween genomes is essential for comparative genomics. Various processes including insertion/deletion and inversion co...is characterized by its integrated workflow, fast speed and...2421 days ago
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2419 days ago