INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2415 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idiogram drawing as...lain the scientists. "The output of the program is Microsoft XL table an...2415 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines us...behind the AYB base-calling software. By default, observations on...g and do not incorporate effects from more esoteric sources of no...a format sequences and a file describing the covariance of noise...2414 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA for several de...nanopore-based sequencing instrument, the Oxford Nanopore Min...nopore reads using complementary MiSeq data and produce a de...2413 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct independent geno...utational and quantitative approaches for comparing and analy...quire familiarity with UNIX scripting and/or programming to c...2413 days ago
2413 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instr...on the right. Local installation: You can install Ribbon locally from Github by f...2413 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...is an XML language designed to describe phylogenetic trees (or networks) and associat...oXML provides elements for commonly used features, such as taxonomic informat...Using these standardized elements allows interoperability between various ap...2413 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2413 days ago
collinearity: scripts to parse and analyse MCScanX collinearity output
scripts to parse and analyse MCScanX collinearity output2413 days ago