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poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequenc...formation are available at https://sourceforge.net/p/rpore/wiki/Home/ Contact:mick.wats...2397 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web serve...eries of downstream classification steps. This wor...Acids Research April 4, 2012. If you have any questions or bug reports, please let us know at <beiko...2393 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Sin...2385 days ago
TeachEnG: Teaching Engine for Genomics
TeachEnG (pronounced “teaching”),...Genomics, provides educational games to help students and researchers unde...ee reconstruction algorithms, with accompanying video tutorials. Please contact us via email (knoweng@illinois.edu) if you have any questions or...2377 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facili.... Delta takes Hi-C or ChIA-PET con...g domains and chromatin loops in the genome. It then generates a physical 3D m...usible consensus 3D structure of the genome. Deltafea...2370 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparative Analysis and&nbs...;Scaffold Assemblies, distribute...MIT license. Main features: works with any...ashion allows to simultaneously wor...caffold assemblies obtained from any&nbs...ly provides an interactive framework for a visual...2362 days ago
ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose collection of scripts. To run the correc...on below. Descriptions of the other scriptsare at the bottom of this file. Contact: gurtowsk...2354 days ago