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CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36...2855 days ago
- ...tions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads. KisSplice...
2875 days ago
- ...iang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology 15 (6): R84. doi:10.1186/gb-2014-15-6-r84. More at https://...
2866 days ago
GeneValidator - Identify problems with predicted genes
...s C & Wurm Y. 2016. GeneValidator: identify problems with protein-coding gene predictions. Bioinformatics, doi: 10.1093/bioinformatics/btw015.2865 days ago
- ...GeneMark-ET and AUGUSTUS provided motivation for designing a new combined tool for automatic gene prediction. http://www.ncbi.nlm.nih.gov/pubmed/26559507...
2007 days ago
- ...emory-optimised, so it can be run even on the laptop for small-to-medium size genomes flexible toward many sequencing technologies (Illumina, 454 or Sanger) and library types...
2859 days ago
- ...bsp;(e.g. 'A', 'A0', 'A-0') and can only contain letters, numbers and _. No punctuation! Maximum row + column total is 150 — if exceeded, rows and columns are limited to 75. If you are using order, siz...
2858 days ago
OPERA : Optimal Paired-End Read Assembler
...footprint). We therefore encourage you to download and use our latest version: OPERA-LG. In our benchmarks, it has significantly improved corrected N50 and reduced the number of sc...2851 days ago
- ...pson and Durbin, 2010 and 2012) and has a similar workflow.As a typical de novo assembler, fermi tends to produce contigs with slightly longer N50. However, the major weakness...
2851 days ago
BLAST Ring Image Generator (BRIG)
...you have any questions or comments, post them on one of the trackers on BRIG’s SourceForge page: http://sourceforge.net/tracker/?group_id=328245. Features: Images show si...2830 days ago
