FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer similarirty and the point of dif...eotide) and results in an optimal alignment faster than conventional dymanic programming techniques. It is also better...2392 days ago
Biological file format tutorial
This section explains some of the commonly used file formats in bioinformatics. The information provided here is basic and designed to help users to distinguish the diffe...2383 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithm...he Ref-uLR two-way alignments to create three-way alignments using a dynamic programming algorithm. Statistics on thes...2364 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Perl library called CGI. It was simple enough to get started without knowing much...2357 days ago
2350 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and envi...ober - Uppsala2017 March - Uppsala2017 November - UppsalaRNAseq tutorials R Programming Foundations for Life Scientis...2262 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences...ps) of two sequences along their entire length. The algorithm uses a dynamic programming method to ensure the alignmen...2199 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approac...alignments of the fragments are then used for implementing a sparse dynamic programming (SDP)-based split alignment a...2234 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supports biological...2098 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality. Too many t...anscript assemblies is much better than too few. It allows one then to apply biological...2095 days ago