2995 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew Univers...f transcriptomes from RNA-seq data. Trinity combines three indep...inity partitions the sequence data into many individual de Bruij...nchworm assembles the RNA-seq data into the unique sequences of...directory. Assemble RNA-Seq data like...2992 days ago
2955 days ago
2978 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_...2969 days ago
2966 days ago
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2958 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowl...oring sequencing files (your own data or from public sources) Chec...SAM/BAM alignment files Visualizing data in a genome browser RNA-Se...ng R/Bioconductor General Tips for Data Anal...2958 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly importan...pot outliers is necessary in such large and complex data sets...2958 days ago