3009 days ago
2992 days ago
RACA: Reference-Assisted Chromosome Assembly
..., an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end re...2992 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple ass...2992 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be use...2992 days ago
2980 days ago
2979 days ago
2973 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
..., trimming, general sequence manipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome browser RNA-Seq De novo...2973 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST map...2973 days ago