Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...-seq, Nature Biotechnology (2021). Documentation and tutorials for the kallisto bustools workflow are available at http://pachterlab.github.io/kallistobustools. h...1180 days ago
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Many-Core Engine (MCE) for Perl example
...er. PDL::IO::Storable is required in scripts running PDL. SOURCE AND FURTHER READING The source, cookbook, and examples are hosted at GitHub. https://github.com/marioroy/mce-perl ht...2705 days ago
TMAP - torrent mapping alignment program General Notes
...uite release below. Get the latest source code: git clone git://github.com/iontorrent/TMAP.git cd TMAP git submodule init git submodule update https://github.com/iontorrent/TS/tree/master...2644 days ago
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ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...d provide evidence that ConPADE performs well as long as enough sequencing coverage is available, or the true contig ploidy is low. https://github.com/microsoftgenomics2681 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
...l change significantly from one version to another. If you want to use this software, please stay up to date with the list of known issues:https://github.com/BinPro/CONCOCT/issues2671 days ago
GroopM: Metagenomic binning toolset
...nomic datasets. GroopM is largely parameter-free. Use: groopm -h for more info. For installation and usage instructions see : http://ecogenomics.github.io/GroopM/2670 days ago