Results for "PacBio read correction"
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caffMatch is a novel scaffolding tool based on Maximum-Weight Ma...lity scaffolds from NGS data (reads and contigs). The tool is wr...n case one needs to first map reads to contigs (instead of provi...files produced after mapping reads to contigs and the resulting...) corresponding to the second read of th...2752 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detect...fortunately, the mapping and alignment of mate pair read pairs to a reference genome i...ary preparation protocol artifacts (biotin junction reads, pai...2751 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can ru...ry. PEAR evaluates all possible paired-end read overlaps and without requirin...tation, it can merge millions of paired end reads with...
2746 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on long mole...uses information from assemblies made with illumina short reads and PacBio long reads to improve contiguities of an assembly generated with PacBio lon...
2746 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format wi...ximise the probability of the forward and reverse reads havi...
2712 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...omatically via a simple GUI. Contig boundaries and read coverage can be displayed for...led sequence data. BRIG also accepts SAM-formatted read-mappi...
2687 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural varia...und in downloads.----- PBJelly -----Read The Paper http://www.plo...ipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads...ft genomes. ----- PBHoney -----Read The P...2676 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates som...default:Unmapped -e | --empty : generate EMPTY bams for chromosome having no read mappe...2675 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can diffe...y from the genome being sequenced. Mapping reads to reference genomes makes u...and quality for 454 and Illumina sequence reads. YA...2675 days ago
- COCACOLA is a general framework that combines different types of information: sequence COmposition, CoverAge across multiple samples, CO-alignment to reference genomes and paired-end reads Link...
2669 days ago
