2534 days ago
2530 days ago
MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automatic system for determining the si.... To date, the main application of Moss has been in detecting plagiarism in programming classes. Since its developmen...2382 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-...ccuracy and general applicability of BLAST with computational efficiency, accessibility, an...n be analyzed efficiently even when only modest computation...2519 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of...ches of functional genomics and of the potential and limitations of computation...2507 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembl...mal genomic scaffolds with high-throughput paired-end sequences. Journal of Computation...2394 days ago
Computational Genomics: Applied Comparative Genomics
...conduct independent genomic analyses. We will study the leading computational and quantitative approaches f...hough the course will require familiarity with UNIX scripting and/or programming to complete the assignments a...2392 days ago
2392 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer similarirty and the point of diffe...otide) and results in an optimal alignment faster than conventional dymanic programming techniques. It is also better...2382 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms...e Ref-uLR two-way alignments to create three-way alignments using a dynamic programming algorithm. Statistics on thes...2355 days ago