2515 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy...nbsp;refine and tba tools to align either "draft" or "finished" quali...2509 days ago
orthodotter: Synteny plots (oxford grid)
orthodotter -h ----------------------------------------------------------------------...t -fSize <int> : fontSize, default is 1 -filter : check chromosome names -h...2489 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to t...bgraph of the k-mer (deBruijn) graph of oligonucleotides with unique high quali...2399 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders:&nbs...2393 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer....edback at mike.smith@embl.de. If you’re not interested in the quali...2382 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-map...ror correctors and consensus tools, miniasm may also be useful to produce high-quali...2379 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accele...Reduces the processing time of sequences comparisons while providing highest quali...2375 days ago
2365 days ago
Musket: a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error correction algorithm targetting Illu...ultistage workflow. Our performance evaluation results, in terms of correction quali...2370 days ago