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Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 w...2832 days ago
- ...one or multiple breakpoints. The Syntax (shown above the table) gives a detailed description of the variant and its location (e.g. chr11:g.36585230_76606619del, a deletion of...
2831 days ago
- ...f localized haplotype clustering. Am J Hum Genet 81:1084-1097.doi:10.1086/521987 The citation for Beagle...ons of reference samples. Am J Hum Genet 98:116-126.doi:10.1016/j.ajhg.2015.11.020 The citation for Beag...
2805 days ago
- ...rts simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLi...
2798 days ago
- ...g sequences (eg. ONT reads, PacBio reads, another draft genomes, etc) Paper at https://gigascience.biomedcentral.com/articles/10.1186/s13742-015-0076-3
2797 days ago
Comparative genomics educational material and papers bookmarks
...ed. The number of porcine EBRs is comparable to the number of bovine-lineage-specific EBRs (100) reported earlier using a slightly lower resolution (500 kilobases (kb)), ind...2792 days ago
Method in Comparative genomics !!
...e identification with high sensitivity and specificity. We used this test to revisit the genome of S. cerevisiae, reducing the overall gene count by 500 genes (10% of previously an...2792 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by Sou...2779 days ago
- ...rs get interactivity without requiring round-trips to servers and without plugins. GoJS normally runs completely in the browser, rendering to an HTML5 Canvas element or SVG without...
2779 days ago
- ...en kmer size. 3. Merging all the assemblies of the partition. 4. Combining all the assemblies of the partition (using velvet with kmer value of 31). 5. Finaly, re-assembling the wh...
2772 days ago
