Results for "Comparison Tool"
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CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for th...different sets of contigs for bacterial genomes. A tool, named CISA, has been develop...mblers and the hybrid assemblies merged by existing tools. This tool is implemented in...2725 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produce high-quality scaffolds from NGS data (reads and contigs). The tool is written in Python 2.7. It...
2727 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from meta...Description MeGAMerge is a perl based wrapper/tool that can accept any number of...quirements: You will need to have the following tools installed and in $PATH, or a...2721 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a micr...of Prodigal include: Speed: Prodigal is an extremely fast gene recognition tool (written in very vanilla C)....2711 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metagenomic se...
2644 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus...environment variable. In order to run the included tools (ex hal2maf) in the submodul...ild process, you are unlikely to be able to use the tool. Please submit a GitHub issue...
2692 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel...2678 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors."...ignments between exons. Currently, we use BLAT to do this all-vs-all comp...
2672 days ago
- maftools - An R package to summarize, analyze and visualize MAF files....r any in-house studies as long as the data is in MAF format. Maftools can also handle ICGC Simple Somatic Mutation format. maftools is on bioRxiv Please cite...
2662 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or d...
2661 days ago
