Results for "Gene expression"
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UpSetR generates static UpSet plots. The UpSet technique visualizes set intersectio...oVenn (Hulsen et al., 2008) and jvenn (Bardou et al., 2014) "Expression" takes the input used by the...2618 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the f...ncies- between pairs of ancestral genes or gene domains.Ancestral ge...mains are deduced from reconciled gene trees in a context of birth,...t the histories of domains inside genes, inc...2618 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical ste...mbly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly Gene Predi...2614 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we pres...rently contains a large collection of diverse gene set libraries available for a...contains 180 184 annotated gene sets from 102 gene set l...2605 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it re...
2600 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pri...bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra...t that it cannot replace other alignment-based phylogenetic me...
2598 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query,...al metabolic and non-metabolic pathways, ERGO™ assigns functions to genes, integrates genes into...2586 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and arch...process that includes prediction of protein-coding genes, as well as other functional...s such as structural RNAs, tRNAs, small RNAs, pseudogenes, con...2586 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real...facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from...2579 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is pres...utationally undemanding. It can be combined with genomic signature and/or phylogenetic tr...2549 days ago
