Results for "Graph-theory based studies"
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GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness...2750 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept...ulti-FASTA format to produce an improved contig set based o...2750 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses information from assemblies made w...
2750 days ago
- pyScaf orders contigs from genome assemblies utilising several types of informatio...aired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based mode) synteny to the genome...med superbly on simulated heterozygous genomes based o...
2750 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have b...are hard to assemble using overlap-consensus-layout approach. De Bruijn graph-based a...
2749 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to discover novel motif...or protein sequences, and to perform a wide variety of other motif-based analyses. The MEME Suite supports motif-based a...
2746 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for compara...lyses of genomic variation. Such analyses are often based on whole-genome alignments to.../28/12/i7/268598/GenomeRing-alignment-visualization-based-o...2720 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best alignment per query and is dramatically faster and more s...
2718 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provide...s). Trees can be exported to several graphical formats, both bitmap and vector based....2707 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constructi...
2701 days ago
