3044 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates co...o perform and support vertebrate comparative genomic analyses. We use robust software and pipelines to produce refe...3040 days ago
3039 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represent...tion of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis,...3016 days ago
Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline3009 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is...n a standard desktop computer. More at http://www.exelixis-lab.org/web/software/pear Paper: http://www....3002 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works bo...omparison. More at http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinfor...3002 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end re...warnings, and produces a new broken assembly based on the error calls. The software requires as input an assembly...3002 days ago
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