Results for "du"
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LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and...2194 days ago
- ...and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)Thi...er:## try http:// if https:// URLs are not supportedsource("https://bioconductor.org/biocLite.R")biocLite(...
2908 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by sel...
2902 days ago
- ...o; sequence divergence. A gene exhibiting exceptional deviations according to both synteny and mutability criteria, is considered a validated HGT product. We first employed the tech...
2902 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required files to yo...2902 days ago
- ...-generation, sequencing, bowtie, sam, bam, primer, tutorial, how-to, introductionRevisions &nbs...l used in next-generation sequence analysis. This primer provides an introduction to SAMtools, and is gear...
2901 days ago
- ...le it also leverages the use of R and python in background for specific modules. Major focus of CSBB is to...Linux, UNIX, MAC OS and Windows platforms. Currently CSBB provides 13 modules focused on analytical task...
2895 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...minute, 909 times faster than Megablast and 11 times faster than the abundance estimation program MetaPhlAn. Kraken is available at http://ccb.jhu.edu/software/kraken/. Krona htt...2897 days ago
- ...ial and viral protein sequences. By default, Kaiju uses either the available complete genomes from NCBI RefSeq or the microbial subset of the non-redundant protein database nr used...
2897 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM form...
2881 days ago
